close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0402Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
SO_0989
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.754
SO_0843
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.691
ifcR
Fe(III)-induced transcriptional regulator IfcR; Belongs to the LysR transcriptional regulatory family.
  
     0.690
SO_4140
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.689
trpI
Transcriptional activator of tryptophan biosynthesis TrpI; Belongs to the LysR transcriptional regulatory family.
  
    0.688
SO_1046
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.685
SO_1916
DMSO-responsive transcriptional activator of efflux pump LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.674
hmgR
Homogentisate-responsive transcriptional repressor of homogenetisate degradation HmgR; Belongs to the LysR transcriptional regulatory family.
  
    0.673
SO_0401
Putative NADPH-dependent quinone oxidoreductase; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
 
    0.614
SO_0997
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.596
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.