STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0404Zinc dependent metalloprotease domain lipoprotein. (1152 aa)    
Predicted Functional Partners:
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
  
   
 0.799
SO_0497
Serine/threonine protein kinase.
  
    0.775
SO_3124
Dual specificity protein-tyrosine phosphatase.
  
     0.769
SO_0939
Split-soret diheme cytochrome c.
  
     0.768
SO_0403
Predicted outer membrane protein.
  
    0.761
SO_1505
Proton:peptide symporter POT family.
  
    0.758
SO_0719
TonB-dependent hemoprotein receptor.
  
     0.749
SO_4539
Extracellular peptidase family S8; Belongs to the peptidase S8 family.
  
     0.739
SO_2930
Bifunctional pectinolytic enzyme/cytochrome c.
  
     0.718
lspA
Signal peptidase II LspA; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.712
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.