Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilDType IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (308 aa)    
Predicted Functional Partners:
pilC
Type IV pilus inner membrane protein PilC.
 
  
 0.987
pilT
Pilus retraction protein PilT.
 
   
 0.975
pilB
Type IV pilus assembly ATPase PilB.
 
 
 0.970
pilQ
Type IV pilus secretin PilQ.
 
  
 0.950
pilO
Type IV pilus biogenesis protein PilO.
 
   
 0.912
pilM
Type IV pilus biogenesis protein PilM.
 
  
 0.897
pilU
Pilus retraction ATPase PilU.
  
   
 0.896
pilN
Type IV pilus biogenesis protein PilN.
 
  
 0.893
mshG
MSHA biogenesis protein MshG.
 
  
 0.888
gspF
T2aSS secretion system inner membrane platform protein GspF.
 
  
 0.886
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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