STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilAType IV pilin protein PilA. (138 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus secretin PilQ.
 
   
 0.833
pilN
Type IV pilus biogenesis protein PilN.
  
   
 0.771
pilO
Type IV pilus biogenesis protein PilO.
  
   
 0.769
pilM
Type IV pilus biogenesis protein PilM.
 
   
 0.753
pilB
Type IV pilus assembly ATPase PilB.
 
  
 0.744
pilD
Type IV prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.690
SO_0033
Peptidoglycan-binding protein.
  
     0.647
pilC
Type IV pilus inner membrane protein PilC.
 
  
 0.621
pilP
PilQ chaperone PilP.
  
   
 0.572
fur
Transcriptional repressor of iron homeostasis Fur; Belongs to the Fur family.
   
    0.516
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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