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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0427Bifunctional diguanylate cyclase / phosphodiesterase with PAS sensory domain. (1491 aa)    
Predicted Functional Partners:
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
 
 0.978
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
 
 
 0.912
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
 
 0.910
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
0.904
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
  
 
 0.901
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
 
0.895
torS
Histidine kinase; TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS.
  
 
 0.885
SO_4445
Two component signal transduction system hybrid histidine kinase/response regulator.
 
 
 0.868
SO_2544
Two component signal transduction system hybrid histidine kinase/response regulator with Hpt domain.
  
 
 0.827
SO_2127
Diguanylate cyclase with response regulator receiver modulation.
 
 
0.800
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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