STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdeBSignalling protein with PAS GGDEF and EAL domains; Affects motility and biofilm formation, and is linked to the regulation of sulfate uptake and assimilation. (856 aa)    
Predicted Functional Partners:
SO_3759
Diguanylate cyclase with GAF sensory domain.
  
0.931
SO_0760
Ammonium transporter channel family protein.
      0.896
SO_0860
Two component signal transduction system response regulator with HD domain.
  
 0.890
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
  
  
 0.862
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
 
 0.839
SO_4003
Metal dependent phosphohydrolase with response regulator receiver modulation.
  
 0.839
SO_2611
c-di-GMP-binding protein.
    
   0.819
SO_2366
Two component signal transduction system response regulator with DUF3369 and HD domains.
  
 0.810
SO_2039
Signalling protein with EAL domain.
  
    0.798
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
  
 0.795
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.