Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0438Oxidoreductase short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (267 aa)    
Predicted Functional Partners:
pdeB
Signalling protein with PAS GGDEF and EAL domains; Affects motility and biofilm formation, and is linked to the regulation of sulfate uptake and assimilation.
       0.561
natA
ABC-type sodium efflux system ATPase component NatA.
  
     0.463
SO_2813
Oxidoreductase short chain dehydrogenase/reductase family.
 
 
0.436
tesA
Multifunctional thioesterase/protease/lysophospholipase L1 TesA.
  
    0.422
ybbA
Putative ABC-type fatty acid export system ATPase component YbbA.
 
   
 0.412
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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