STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0440ImpA-like cell surface immunomodulating metalloprotease. (1073 aa)    
Predicted Functional Partners:
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
 
 
 0.822
sapSH
Extracellular serine alkaline protease SapSH.
 
 
 0.750
SO_0639
Collagenase.
 
    0.665
dcm
Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm.
  
   
 0.557
SO_4080
Outer membrane lipoprotein intimin-like protein.
  
     0.550
ftsK
Double-stranded DNA translocase FtsK; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the directi [...]
    
 
 0.485
SO_0439
Uncharacterized protein.
       0.476
purD
Phosphoribosylamine-glycine ligase PurD; Belongs to the GARS family.
       0.457
mshN
MSHA biogenesis protein MshN.
  
     0.447
SO_3317
5'-nucleotidase; Belongs to the 5'-nucleotidase family.
 
     0.424
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.