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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zntRZinc and cadmium (II) responsive transcriptional activator ZntR. (163 aa)    
Predicted Functional Partners:
SO_0444
Zinc/cadmium-responsive efflux pump.
  
    0.862
arsP
Permease of unknown function DUF318 ArsP.
     
 0.724
corC
Magnesium and cobalt efflux protein CorC.
      
 0.720
accADCB
acetyl-CoA carboxylase multifunctional enzyme AccADCB.
   
   0.616
glmR
Glucosamine-6-phosphate sensitive transcriptional repressor of lipopolysaccharide biosyntheis GlmR.
      
 0.586
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
   
 
 0.563
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
   
 
 0.562
arsR
Arsenite-sensing transcriptional repressor ArsR.
      
 0.561
glnA
Glutamine synthetase GlnA.
 
 
 0.550
rpoB
DNA-directed RNA polymerase beta subunit RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.545
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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