Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zntRZinc and cadmium (II) responsive transcriptional activator ZntR. (163 aa)    
Predicted Functional Partners:
SO_0444
Zinc/cadmium-responsive efflux pump.
  
    0.862
corC
Magnesium and cobalt efflux protein CorC.
      
 0.699
arsP
Permease of unknown function DUF318 ArsP.
     
 0.673
prfB
Peptide chain release factor 2 PrfB; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.671
glmR
Glucosamine-6-phosphate sensitive transcriptional repressor of lipopolysaccharide biosyntheis GlmR.
      
 0.669
rnc
Ribonuclease III Rnc; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
      
 0.668
arsR
Arsenite-sensing transcriptional repressor ArsR.
      
 0.561
glnA
Glutamine synthetase GlnA.
 
 
 0.543
rpmE
50S ribosomal protein L31 RpmE; Binds the 23S rRNA.
   
  
 0.522
accADCB
acetyl-CoA carboxylase multifunctional enzyme AccADCB.
   
   0.499
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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