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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxCThioredoxin 2 TrxC; Belongs to the thioredoxin family. (140 aa)    
Predicted Functional Partners:
trxB
Thioredoxin reductase TrxB.
 
 
 0.877
grxA
Glutaredoxin GrxA.
  
  
 0.786
ohrA
Peroxiredoxin OhrA.
   
  
 0.750
oxyR
Transcriptional regulator of oxidative stress OxyR; Belongs to the LysR transcriptional regulatory family.
      
 0.732
tesB
acyl-CoA thioesterase II TesB.
      
 0.711
fadH
NADP-dependent 24-dienoyl-CoA reductase FadH.
  
  
 0.678
hypB
Ni2+-binding GTPase involved in regulation of NiFe hydrogenase expression and maturation HypB.
  
  
 0.673
hupE
Nickel uptake transporter HupE.
   
  
 0.658
katG
Bifunctional catalase/peroxidase HPI KatG; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
   
 
 0.626
gst
Glutathione S-transferase Gst.
   
 
 0.592
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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