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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0455Alpha-ketoglutarate uptake system bifunctional large and small subunit permease component. (677 aa)    
Predicted Functional Partners:
SO_0456
Alpha-ketoglutarate uptake system substrate-binding component.
    0.988
SO_0454
Protein of unknown function DUF1850.
 
    0.936
dctP
TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP.
  
     0.563
macC
ABC-type macrolide export system secretin component MacC.
   
  
 0.515
nicT
TonB-dependent nickel receptor NicT.
   
  
 0.514
SO_3692
ABC-type macrolide family export system ATPase component.
   
  
 0.507
SO_3694
ABC-type macrolide family export system MFP component.
   
  
 0.506
ktrA
Sodium-dependent potassium uptake system NAD binding component KtrA.
      
 0.504
rmrB
Multidrug efflux pump permease component RmrB; Belongs to the major facilitator superfamily.
      
 0.503
SO_1917
Major facilitator superfamily transporter required for growth on DMSO MFS superfamily.
      
 0.503
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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