STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0474Protein of unknown function DUF2166. (192 aa)    
Predicted Functional Partners:
SO_1712
Transcriptional regulator.
  
    0.712
SO_4716
Acteyltransferase GNAT family.
  
    0.605
SO_4047
SoxA-like diheme cytochrome c.
  
     0.571
trmL
tRNA (cytidine34-2'-O)-methyltransferase TrmL; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
   
    0.562
SO_3075
RNA methyltransferase TrmH family.
   
    0.557
wzz
Polysaccharide chain length determinant Wzz.
  
     0.517
SO_1736
Protein of unknown function DUF502.
  
    0.509
sirH
Cytochrome c maturation system periplasmic thioredoxin SirH.
  
    0.507
SO_0886
Putative metal-binding protein of unknown function DUF2387.
  
    0.495
SO_0771
Thiol-disulphide oxidoreductase DCC family.
  
     0.489
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.