Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0474Protein of unknown function DUF2166. (192 aa)    
Predicted Functional Partners:
SO_1712
Transcriptional regulator.
  
     0.712
SO_4716
Acteyltransferase GNAT family.
  
    0.608
SO_4047
SoxA-like diheme cytochrome c.
  
     0.571
SO_3075
RNA methyltransferase TrmH family.
   
    0.555
trmL
tRNA (cytidine34-2'-O)-methyltransferase TrmL; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
   
    0.555
SO_1736
Protein of unknown function DUF502.
  
    0.517
wzz
Polysaccharide chain length determinant Wzz.
  
     0.517
sirH
Cytochrome c maturation system periplasmic thioredoxin SirH.
  
    0.511
SO_0886
Putative metal-binding protein of unknown function DUF2387.
  
    0.495
SO_0771
Thiol-disulphide oxidoreductase DCC family.
  
     0.489
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.