STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sirGCytochrome c maturation system haem lyase subunit SirG. (224 aa)    
Predicted Functional Partners:
sirE
Cytochrome c maturation system haem lyase subunit SirE.
 
 
 0.906
sirD
Menaquinol oxidase SirD.
 
  
 0.867
ccmF
Cytochrome c synthetase cytochrome b containing quinol-haem oxidoreductase subunit CcmF.
 
 
 0.796
sirI
Cytochrome c maturation system peptidyl-prolyl cis-trans isomerase SirI.
  
  
 0.778
sirF
Cytochrome c maturation system haem lyase subunit SirF; Possible subunit of a heme lyase.
 
  
 0.758
ccmH
Cytochrome c synthetase subunit CcmH; Possible subunit of a heme lyase.
 
  
 0.722
sirB
Sulfurtransferase SirB.
 
    0.679
sirA
Sulfite reductase octaheme cytochrome c SirA; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process. Required for sulfite respiration under anaerobic growth conditions. Does not contribute to nitrite reduction.
  
  
 0.661
nosY
ABC-type copper transport system permease component NosY.
     
 0.635
sirH
Cytochrome c maturation system periplasmic thioredoxin SirH.
  
  
 0.621
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.