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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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co-expression
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[Homology]
Score
sirDMenaquinol oxidase SirD. (315 aa)    
Predicted Functional Partners:
nrfA
Ammonia-forming nitrite reductase NrfA; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process. Has very low activity toward hydroxylamine. Has even lower activity toward sulfite. Sulfite reductase activity is maximal at neutral pH (By similarity); Belongs to the cytochrome c-552 family.
 
  
 0.913
sirC
4Fe-4S ferredoxin SirC.
 
    0.900
sirG
Cytochrome c maturation system haem lyase subunit SirG.
 
  
 0.869
napB
Periplasmic nitrate reductase cytochrome c subunit NapB; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from the membrane-anchored tetraheme c-type CymA protein and transfers these to NapA subunit, thus allowing electron flow between membrane and periplasm. Not essential for nitrate reduction but confers advantage to the organism when grown on nitrate and thereby a fitness gain in utilizing nitrate. Belongs to the NapB family.
  
  
 0.797
sirA
Sulfite reductase octaheme cytochrome c SirA; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process. Required for sulfite respiration under anaerobic growth conditions. Does not contribute to nitrite reduction.
  
  
 0.771
torC
Trimethylamine N-oxide reductase membrane anchored cytochrome c component TorC; Belongs to the TorC/TorY family.
  
   
 0.720
sirI
Cytochrome c maturation system peptidyl-prolyl cis-trans isomerase SirI.
 
  
 0.713
napG
Periplasmic nitrate reductase ferredoxin component NapG.
 
     0.680
nosY
ABC-type copper transport system permease component NosY.
     
 0.678
nosL
ABC-type copper uptake system periplasmic chaperone component NosL.
     
 0.674
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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