Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nosYABC-type copper transport system permease component NosY. (298 aa)    
Predicted Functional Partners:
nosL
ABC-type copper uptake system periplasmic chaperone component NosL.
 
 
 0.999
nosD
ABC-type copper transport system substrate-binding component NosD.
 
 0.999
nosF
ABC-type copper transport system ATPase component NosF.
 
 0.999
napA
Periplasmic nitrate reductase molybdopterin-binding subunit NapA; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
  
   
 0.802
SO_0073
ABC-type efflux system ATPase component.
  
 
 0.784
SO_1706
ABC-type drugE1 family efflux system ATPase component.
  
 
 0.784
SO_1750
ABC-type transport system ATPase component.
  
 
 0.784
SO_1865
ABC-type export system ATPase component.
  
 
 0.784
SO_3802
ABC-type DrugE1 family export system ATPase component.
  
 
 0.784
nnrS
Heme-copper-containing inner membrane protein NnrS.
 
    0.703
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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