STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0505Sel1 repeat protein. (247 aa)    
Predicted Functional Partners:
SO_0625
Periplasmic cyctochrome c oxidase regulatory protein.
  
     0.772
SO_4139
TPR repeat protein.
  
     0.772
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.
       0.752
SO_4559
Sel1 domain-containing protein.
  
    0.733
motX
Flagellar rotation associated protein MotX.
  
     0.564
SO_3611
AAA ATPase family protein.
   
 0.531
SO_3885
AAA ATPase family protein; Belongs to the AAA ATPase family.
   
 0.531
SO_0508
Uncharacterized protein.
       0.506
fre
NAD(P)H-flavin reductase Fre.
  
   0.486
piuC
Fur regulated PKHD-type hydroxylase PiuC.
  
    0.408
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.