Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0514Protein of unknown function DUF3478. (121 aa)    
Predicted Functional Partners:
SO_0515
DUF3012 domain-containing lipoprotein.
  
    0.678
yaeJ
Stop codon-independent peptidyl-tRNA hydrolyzing factor YaeJ.
       0.535
prtV
Extracellular metalloprotease PrtV.
   
    0.458
SO_0516
Uncharacterized protein.
       0.442
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
   
    0.442
yggU
Protein of unknown function DUF167 YggU; Belongs to the UPF0235 family.
   
    0.421
uup
Reg family ATPase involved in maintaining contact-dependent viability Uup.
   
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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