STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmrBMultidrug efflux pump permease component RmrB; Belongs to the major facilitator superfamily. (539 aa)    
Predicted Functional Partners:
macC
ABC-type macrolide export system secretin component MacC.
 
  
 0.732
SO_4051
Putative DUF2955 domain transport system MFP component.
 
 0.732
SO_1917
Major facilitator superfamily transporter required for growth on DMSO MFS superfamily.
  
  
 0.642
SO_3694
ABC-type macrolide family export system MFP component.
  
 
 0.599
emrD
Multidrug efflux protein EmrD.
  
  
 0.551
ktrB-2
Sodium-dependent potassium uptake system permease component KtrB.
   
  
 0.528
SO_3692
ABC-type macrolide family export system ATPase component.
   
  
 0.523
SO_2523
TonB-dependent phytase receptor.
   
  
 0.521
SO_1918
Multidrug and toxin efflux protein MATE family.
   
  
 0.517
SO_3691
ABC-type macrolide family export system permease component 2.
    
 
 0.516
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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