STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
trpITranscriptional activator of tryptophan biosynthesis TrpI; Belongs to the LysR transcriptional regulatory family. (294 aa)    
Predicted Functional Partners:
trpCF
Bifunctional indole-3-glycerolphosphate synthetase/phosphoribosylanthranilate isomerase TrpCF; Belongs to the TrpC family.
      
 0.805
lldR
Transcriptional regulator of L-lactate utilization LldR; Belongs to the LysR transcriptional regulatory family.
  
     0.705
SO_4154
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.691
SO_0402
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.690
SO_3363
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.680
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase PanB; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
      
 0.670
panC
Pantoate--beta-alanine ligase PanC; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
      
 0.664
SO_0839
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.645
SO_3473
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.641
SO_1259
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.606
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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