STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0535Permease of unknown function DUF318. (331 aa)    
Predicted Functional Partners:
SO_0536
Redox-active disulfide protein 2.
 
    0.946
SO_4825
Redox-active disulfide protein.
 
    0.778
SO_0534
Arsenate permease ACR3 family.
  
  
 0.722
arsC2
Thioredoxin-coupled cytoplasmic arsenate reductase ArsC2; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.701
arsR
Arsenite-sensing transcriptional repressor ArsR.
 
  
 0.685
SO_0539
Transport protein MFS superfamily.
  
    0.494
gapA
Glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.452
SO_1760
Branched-chain amino acid efflux pump permease component 1 AzlC family.
   
    0.442
SO_3029
Protein of unknown function DUF2798.
   
    0.442
SO_0444
Zinc/cadmium-responsive efflux pump.
  
     0.433
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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