STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0535Permease of unknown function DUF318. (331 aa)    
Predicted Functional Partners:
SO_0536
Redox-active disulfide protein 2.
 
   
 0.947
SO_4825
Redox-active disulfide protein.
 
   
 0.782
SO_0534
Arsenate permease ACR3 family.
  
  
 0.732
arsC2
Thioredoxin-coupled cytoplasmic arsenate reductase ArsC2; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.709
arsR
Arsenite-sensing transcriptional repressor ArsR.
 
  
 0.693
SO_0768
NAD dependent epimerase/dehydratase family protein.
   
    0.592
SO_0539
Transport protein MFS superfamily.
  
    0.491
gapA
Glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
    0.457
SO_1760
Branched-chain amino acid efflux pump permease component 1 AzlC family.
   
    0.443
SO_3029
Protein of unknown function DUF2798.
   
    0.443
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.