Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0551Uncharacterized protein. (169 aa)    
Predicted Functional Partners:
SO_1821
Outer membrane porin.
  
     0.707
SO_0687
Mu phage uncharacterized protein.
   
    0.694
yfcH
Predicted nucleoside-diphosphate sugar epimerase YfcH.
  
    0.599
sodB
Fe/Mn superoxide dismutase SodB; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.594
SO_0975
Disulphide interchange protein DsbD family.
   
    0.583
SO_0835
Putative periplasmic peptidase C15 superfamily.
 
    0.538
SO_0550
Predicted inner membrane protein.
       0.535
SO_1259
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.495
SO_2045
Cation efflux protein CDF family.
   
 0.493
SO_1482
TonB-dependent receptor.
  
    0.488
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.