STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0551Uncharacterized protein. (169 aa)    
Predicted Functional Partners:
SO_1821
Outer membrane porin.
  
     0.707
SO_0687
Mu phage uncharacterized protein.
   
    0.701
SO_0975
Disulphide interchange protein DsbD family.
   
    0.597
sodB
Fe/Mn superoxide dismutase SodB; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.579
yfcH
Predicted nucleoside-diphosphate sugar epimerase YfcH.
  
    0.571
SO_0835
Putative periplasmic peptidase C15 superfamily.
 
     0.543
SO_0550
Predicted inner membrane protein.
  
    0.537
SO_2045
Cation efflux protein CDF family.
   
 0.530
SO_1259
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.488
prmB
50S subunit L3 protein glutamine methyltransferase PrmB; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
  
    0.477
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.