STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0554Periplasmic protein of unknown function DUF3016. (174 aa)    
Predicted Functional Partners:
SO_0614
Peptidase S9 family.
  
     0.711
SO_1944
2OG-Fe(II) oxygenase family protein.
  
    0.695
SO_1829
Putative Zn-dependent protease associated with TonB2 energy transduction system.
  
     0.654
lptC
ABC-type lipopolysaccharide export system MFP component LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.639
SO_3842
Secreted low complexity protein.
  
     0.548
SO_2597
Outer membrane protein of unknown function DUF1302.
  
     0.499
SO_0757
TPR domain lipoprotein.
  
     0.489
SO_1822
TonB-dependent receptor.
  
     0.484
SO_2254
Periplasmic protein of unknown function DUF2803.
  
     0.477
ampE
AmpD signaling modulator AmpE.
  
    0.472
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.