STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0564Zinc-regulated TonB-dependent zinc receptor. (393 aa)    
Predicted Functional Partners:
znuA
ABC-type zinc uptake system substrate-binding component ZnuA.
 
    0.954
znuB
ABC-type zinc uptake system permease component ZnuB.
 
    0.954
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
  
     0.589
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.584
SO_4820
ABC-type zinc uptake system zinc chaperone.
       0.553
yecM
Protein of unknown function YecM.
  
     0.533
ompK
Nucleoside-specific outer membrane porin OmpK.
  
     0.522
SO_0813
RCC1/BLIP-II superfamily lipoprotein.
  
    0.479
SO_0639
Collagenase.
  
     0.474
SO_4182
ATP-dependent protease La (LON) domain protein.
  
     0.470
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.