Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
znuBABC-type zinc uptake system permease component ZnuB. (259 aa)    
Predicted Functional Partners:
znuA
ABC-type zinc uptake system substrate-binding component ZnuA.
 
 
 0.999
SO_0564
Zinc-regulated TonB-dependent zinc receptor.
 
    0.959
SO_4820
ABC-type zinc uptake system zinc chaperone.
    
  0.952
corC
Magnesium and cobalt efflux protein CorC.
      
 0.852
yqfA
Channel protein hemolysin III family subfamily YqfA.
      
 0.675
mdtL
Chloramphenicol resistance protein MdtL.
      
 0.665
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
    0.550
fur
Transcriptional repressor of iron homeostasis Fur; Belongs to the Fur family.
  
  
 0.550
btuF
ABC-type cobalamin uptake system substrate-binding component BtuF.
    
 0.482
mlaE
ABC-type phospholipid uptake (salvage) system permease component MlaE.
 
 
 0.479
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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