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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuBABC-type zinc uptake system permease component ZnuB. (259 aa)    
Predicted Functional Partners:
znuA
ABC-type zinc uptake system substrate-binding component ZnuA.
 
 
 0.999
SO_0564
Zinc-regulated TonB-dependent zinc receptor.
 
    0.954
SO_4820
ABC-type zinc uptake system zinc chaperone.
    
  0.952
corC
Magnesium and cobalt efflux protein CorC.
      
 0.891
mdtL
Chloramphenicol resistance protein MdtL.
   
  
 0.615
fur
Transcriptional repressor of iron homeostasis Fur; Belongs to the Fur family.
  
  
 0.605
yqfA
Channel protein hemolysin III family subfamily YqfA.
      
 0.598
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
    0.553
cvpA
Colicin V production protein CvpA.
     
 0.464
artQ
ABC-type arginine uptakesystem permease component ArtQ.
   
 
 0.462
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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