Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0569Diguanylate cyclase with PAS sensory domain. (324 aa)    
Predicted Functional Partners:
cheC
Chemotaxis signal transduction system inhibitor of MCP methylation CheC.
 
 
 0.957
SO_4003
Metal dependent phosphohydrolase with response regulator receiver modulation.
 
 0.941
SO_0860
Two component signal transduction system response regulator with HD domain.
 
 0.938
SO_3821
Diguanylate phosphodiesterase.
 
   
 0.915
phoB
Phosphate-responsive two component signal transduction system response regulator PhoB.
  
   0.876
SO_4145
Signalling protein with EAL and C2 domains.
 
 0.876
SO_4324
Bifunctional diguanylate cyclase/phosphodiesterase with GAF sensory domain.
 
 
0.876
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
 
 0.874
SO_0859
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
 
 0.866
SO_1387
HD domain protein.
 
 0.854
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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