STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0576Predicted ATPase PhoH family. (464 aa)    
Predicted Functional Partners:
flgP
Outer membrane lipoprotein required for flagellar motility FlgP.
  
    0.555
prkA
Serine protein kinase PrkA.
   
  
 0.550
SO_2883
Protein of unknown function DUF444; Belongs to the UPF0229 family.
   
    0.516
flgT
Flagella assembly protein FlgT.
  
    0.476
SO_2884
SpoVR family protein.
   
    0.464
flgO
Outer membrane lipoprotein required for flagellar motility FlgO.
  
    0.462
motY
Smf-dependent flagellar motor protein MotY.
  
     0.457
SO_2872
Membrane protein of unknown function DUF2069.
  
     0.403
rapA
RNA polymerase-associated helicase RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
  
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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