Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_0578Periplasmic metalloprotease. (800 aa)    
Predicted Functional Partners:
pabC
Aminodeoxychorismate lyase PabC.
      
 0.967
gor
Glutathione-disulfide reductase Gor.
      
 0.960
SO_2183
LD-transpeptidase ErfK/YbiS/YcfS/YnhG family.
      
 0.938
SO_0625
Periplasmic cyctochrome c oxidase regulatory protein.
      
 0.914
astB
N-succinylarginine dihydrolase AstB; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).
   
  
 0.812
SO_0749
Phosphoglycerate mutase family protein.
 
     0.745
SO_3149
Periplasmic amidohydrolase family protein.
  
     0.671
SO_3148
Periplasmic amidohydrolase family protein.
  
     0.667
SO_0614
Peptidase S9 family.
  
     0.659
SO_1310
Serine peptidase S9 family.
  
     0.640
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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