Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
SO_0588Small conductance mechanosensitive ion channel protein MscS family. (1067 aa)    
Predicted Functional Partners:
SO_0587
Glycerophosphodiester phosphodiesterase.
  
    0.759
putA-2
Bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
      0.720
pssA
Phosphatidylserine synthase PssA.
 
     0.495
trkA
Potassium uptake protein TrkA.
      
 0.466
yhgN
6TMS neutral amino acid transporter (NAAT) family protein YhgN.
  
    0.462
ychE
6TMS neutral amino acid transporter (NAAT) family protein YchE.
  
    0.462
SO_3549
Hemerythrin.
  
     0.448
kefB
Glutathione-gated K(+)-efflux system KefB; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.439
SO_3984
Metal ion transporter MIT family.
 
   
 0.437
SO_4571
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.425
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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