STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nosATonB-dependent copper receptor NosA. (668 aa)    
Predicted Functional Partners:
modC-2
ABC-type molybdate uptake system ATPase component ModC; Belongs to the ABC transporter superfamily.
      
 0.784
SO_1522
Lactate transport protein LctP family; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
      
 0.608
cI
Lambda phage lytic gene repressor CI.
  
   
 0.592
SO_2715
Thiamine-regulated TonB-dependent receptor.
  
  
 0.526
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
  
  
 0.517
SO_2533
Periplasmic protein of unknown function DUF3108.
  
 
   0.495
lrgA
Inner membrane protein LrgA.
  
     0.490
nosD
ABC-type copper transport system substrate-binding component NosD.
  
    0.487
SO_4550
Methyltransferase domain protein.
  
    0.461
fnr
Oxygen-responsive transcriptional regulator of anaerobiosis response Fnr; Regulates anaerobic growth on fumarate, nitrite, Fe(3+), TMAO, DMSO, thiosulfate and sulfite, but not on nitrate nor Mn(4+).
      
 0.454
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.