Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nosATonB-dependent copper receptor NosA. (668 aa)    
Predicted Functional Partners:
modC-2
ABC-type molybdate uptake system ATPase component ModC; Belongs to the ABC transporter superfamily.
      
 0.809
SO_1522
Lactate transport protein LctP family; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
      
 0.664
cI
Lambda phage lytic gene repressor CI.
  
   
 0.608
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
  
  
 0.520
lrgA
Inner membrane protein LrgA.
  
     0.490
nosD
ABC-type copper transport system substrate-binding component NosD.
  
    0.489
SO_2715
Thiamine-regulated TonB-dependent receptor.
  
     0.455
SO_0449
Iron-regulated inner membrane protein.
 
   
 0.450
fnr
Oxygen-responsive transcriptional regulator of anaerobiosis response Fnr; Regulates anaerobic growth on fumarate, nitrite, Fe(3+), TMAO, DMSO, thiosulfate and sulfite, but not on nitrate nor Mn(4+).
      
 0.450
SO_4550
Methyltransferase domain protein.
  
    0.448
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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