Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0637Toxin-antitoxin system antidote Rhh family. (91 aa)    
Predicted Functional Partners:
SO_0636
Toxin-antitoxin system toxin GNAT family.
 
    0.968
SO_3831
Acteyltransferase GNAT family.
   
   0.674
SO_2849
Acteyltransferase GNAT family.
 
 
 0.609
SO_0076
Outer membrane morn variant repeat-containing protein.
  
     0.584
SO_0183
Acteyltransferase GNAT family.
   
 
 0.535
SO_0192
Acteyltransferase GNAT family.
   
 
 0.535
SO_0877
Acteyltransferase GNAT family.
   
 
 0.535
SO_0920
Acteyltransferase GNAT family.
   
 
 0.535
rimI
Ribosomal-protein-alanine acetyltransferase RimI.
   
 
 0.535
SO_1374
Acteyltransferase GNAT family.
   
 
 0.535
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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