STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0639Collagenase. (1037 aa)    
Predicted Functional Partners:
sapSH
Extracellular serine alkaline protease SapSH.
 
  
 0.725
gbpA
N-acetylglucosamine-binding protein A GbpA; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
  
  
 0.691
hlyA
Hemolysin HlyA.
      
 0.669
SO_0440
ImpA-like cell surface immunomodulating metalloprotease.
 
    0.665
SO_3808
Protein of unknown function DUF2804.
 
    0.594
altA
Transcriptional regulator AltA.
  
     0.542
prtV
Extracellular metalloprotease PrtV.
  
    0.494
SO_0002
Glutathione uptake transporter.
  
     0.479
SO_0564
Zinc-regulated TonB-dependent zinc receptor.
  
     0.474
SO_1759
Branched-chain amino acid efflux pump permease component 2 AzlD family.
  
    0.472
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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