STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0641Mu phage bifunctional transcriptional repressor. (240 aa)    
Predicted Functional Partners:
tnpA-7
Mu phage transposase OrfA TnpA_MuSo1a.
 
     0.805
SO_2744
Helicase.
  
    0.805
H
Lambda phage tail length tape meausure protein H.
   
  
 0.803
tnpA-8
Mu phage transposase OrfB TnpA_MuSo1b.
 
     0.774
cI
Lambda phage lytic gene repressor CI.
  
   
 0.753
SO_0648
Mu phage protein of unknown function DUF3164.
 
     0.727
gpE
Mu phage large terminase subunit GpE.
 
     0.707
gpF
Mu phage minor capsid protein GpF.
 
     0.685
gpF-2
Mu phage uncharacterized protein GpF.
 
     0.682
gemA-2
Mu phage host gene modulation protein GemA.
 
     0.674
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.