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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0649Mu phage uncharacterized protein. (90 aa)    
Predicted Functional Partners:
SO_0645
Mu phage uncharacterized protein.
  
    0.757
SO_0646
Mu Lambda phage repressor-like DNA binding protein.
  
    0.742
SO_0648
Mu phage protein of unknown function DUF3164.
  
    0.737
kil
Mu phage protein Kil.
  
    0.734
tnpA-8
Mu phage transposase OrfB TnpA_MuSo1b.
  
    0.634
gemA
Mu phage host gene modulation protein GemA.
  
    0.570
SO_0650
Mu phage uncharacterized protein.
  
    0.569
mor
Mu phage middle operon regulator Mor.
  
    0.537
tnpA-7
Mu phage transposase OrfA TnpA_MuSo1a.
  
    0.507
gpF
Mu phage minor capsid protein GpF.
  
    0.455
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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