STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpA-9ISSod1 transposase TnpA_ISSod1. (386 aa)    
Predicted Functional Partners:
E18
Mu phage uncharacterized protein E18.
       0.613
SO_0659
Mu phage lysozyme.
       0.613
SO_0660
Mu phage conserved phage protein.
       0.613
SO_0655
Mu phage protein.
       0.476
com
Mu phage mom transcriptional regulator Com.
       0.430
SO_0662
Mu phage protein of unknown function DUF2730.
       0.430
gp26
Mu phage uncharacterized protein Gp26.
       0.430
SO_0664
Mu phage uncharacterized protein.
       0.430
gpD
Mu phage small terminase subunit GpD.
       0.430
gpE
Mu phage large terminase subunit GpE.
       0.430
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.