STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0659Mu phage lysozyme. (185 aa)    
Predicted Functional Partners:
SO_0660
Mu phage conserved phage protein.
  
    0.809
E18
Mu phage uncharacterized protein E18.
  
    0.789
SO_0667
Mu phage portal protein.
  
    0.700
tnpA-9
ISSod1 transposase TnpA_ISSod1.
       0.613
gpF
Mu phage minor capsid protein GpF.
  
    0.607
SO_3058
Flavocytochrome c flavin subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
    0.602
SO_0662
Mu phage protein of unknown function DUF2730.
  
    0.601
SO_0664
Mu phage uncharacterized protein.
  
    0.573
gp26
Mu phage uncharacterized protein Gp26.
  
    0.570
gpE
Mu phage large terminase subunit GpE.
  
    0.561
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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