Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0662Mu phage protein of unknown function DUF2730. (115 aa)    
Predicted Functional Partners:
SO_0667
Mu phage portal protein.
  
    0.810
gpF
Mu phage minor capsid protein GpF.
  
    0.789
com
Mu phage mom transcriptional regulator Com.
  
    0.783
SO_0664
Mu phage uncharacterized protein.
  
    0.780
gp26
Mu phage uncharacterized protein Gp26.
  
    0.779
gpD
Mu phage small terminase subunit GpD.
  
    0.774
gpE
Mu phage large terminase subunit GpE.
  
    0.773
E18
Mu phage uncharacterized protein E18.
  
    0.629
SO_0659
Mu phage lysozyme.
  
    0.601
SO_0660
Mu phage conserved phage protein.
  
    0.560
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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