STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0673Mu phage uncharacterized protein. (412 aa)    
Predicted Functional Partners:
SO_1939
Uncharacterized protein.
  
    0.721
SO_0908
Ankyrin domain protein.
  
     0.681
SO_1098
2OG-Fe(II) oxygenase family protein.
  
    0.566
SO_0674
Mu phage peptidase.
  
    0.563
SO_0675
Mu phage major head subunit.
       0.559
SO_3772
SH3 domain protein.
   
    0.516
SO_4367
Acyltransferase family protein.
   
    0.516
SO_0672
Mu phage signal peptidase I domain protein.
       0.469
SO_4174
dTDP-4-dehydrorhamnose reductase family; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
     0.437
SO_0920
Acteyltransferase GNAT family.
   
    0.429
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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