Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0678Mu phage uncharacterized protein. (147 aa)    
Predicted Functional Partners:
SO_0676
Mu phage uncharacterized protein.
  
    0.814
SO_0677
Mu phage protein of unknown function DUF1320.
  
    0.795
SO_0679
Mu phage uncharacterized protein.
  
    0.786
katG
Bifunctional catalase/peroxidase HPI KatG; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
   
    0.785
SO_0674
Mu phage peptidase.
  
    0.625
SO_0675
Mu phage major head subunit.
  
    0.625
SO_0502
Transcriptional regulator ArsR family.
   
    0.602
SO_0681
Mu phage uncharacterized protein.
  
    0.519
yifB
ATP-dependent serine peptidase S16 family YifB.
   
    0.511
SO_2664
Mu phage uncharacterized protein.
   
    0.511
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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