STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0679Mu phage uncharacterized protein. (248 aa)    
Predicted Functional Partners:
SO_0678
Mu phage uncharacterized protein.
  
    0.764
SO_0676
Mu phage uncharacterized protein.
  
    0.738
SO_0677
Mu phage protein of unknown function DUF1320.
  
    0.703
SO_0681
Mu phage uncharacterized protein.
  
    0.570
SO_0682
Mu phage uncharacterized protein.
  
    0.558
SO_0675
Mu phage major head subunit.
  
    0.556
SO_0680
Mu phage tape measure protein.
  
    0.553
SO_0674
Mu phage peptidase.
  
    0.552
SO_4151
Polysaccharide deacetylase.
   
    0.410
SO_4487
Two component signal transduction system response regulator with winged helix family DNA binding domain.
   
    0.410
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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