STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0680Mu phage tape measure protein. (1308 aa)    
Predicted Functional Partners:
SO_0677
Mu phage protein of unknown function DUF1320.
 
    0.873
SO_0674
Mu phage peptidase.
 
    0.862
gpG
Mu phage tail completion protein GpG.
 
    0.848
SO_0675
Mu phage major head subunit.
 
  
 0.842
SO_0681
Mu phage uncharacterized protein.
  
    0.821
SO_0682
Mu phage uncharacterized protein.
  
    0.820
SO_0667
Mu phage portal protein.
 
  
 0.783
gpF
Mu phage minor capsid protein GpF.
 
    0.774
gpT
Mu phage major head subunit GpT.
 
  
 0.723
scpA
Segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.720
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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