Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0688Mu phage uncharacterized protein. (599 aa)    
Predicted Functional Partners:
SO_0689
Mu phage uncharacterized protein.
  
    0.800
SO_0687
Mu phage uncharacterized protein.
       0.773
SO_3885
AAA ATPase family protein; Belongs to the AAA ATPase family.
   
    0.602
SO_0690
Mu phage DNA adenine methylase Dam family.
  
    0.482
gpF
Mu phage minor capsid protein GpF.
  
    0.437
yfjY
Protein of unknown function DUF2466 YfjY; Belongs to the UPF0758 family.
   
    0.429
SO_2982
Lambda phage uncharacterized protein.
   
    0.429
SO_4154
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
    0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.