STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0719TonB-dependent hemoprotein receptor. (747 aa)    
Predicted Functional Partners:
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.749
SO_0497
Serine/threonine protein kinase.
  
     0.739
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
  
     0.661
SO_0939
Split-soret diheme cytochrome c.
  
     0.644
SO_3124
Dual specificity protein-tyrosine phosphatase.
  
     0.626
SO_1309
TonB-dependent receptor.
 
   
 0.607
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
    0.586
SO_1661
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.549
hmuB
ABC-type hemin uptake system substrate-binding component HmuB.
 
  
 0.535
gspN
T2aSS secretion system protein GspN.
  
     0.529
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.