Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
phrAPhotoreactivation-associated protein PhrA. (505 aa)    
Predicted Functional Partners:
cfaS
Cyclopropane-fatty-acyl-phospholipid synthase CfaS.
      
 0.956
tupC
ABC-type tungstate uptake system ATPase componet TupC.
  
  
  0.913
lptF
ABC-type lipopolysaccharide export system permease component 1 LptF.
     
  0.900
lptG
ABC-type lipopolysaccharide export system permease component 2 LptG.
     
  0.900
modA
ABC-type molybdate uptake system substrate-binding component ModA.
     
  0.800
modB
ABC-type molybdate uptake system permease component ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     
  0.800
modC
ABC-type molybdate uptake system ATPase component ModC; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.
     
  0.800
SO_3967
Orphan ABC-type transport system substrate-binding component.
     
  0.800
modC-2
ABC-type molybdate uptake system ATPase component ModC; Belongs to the ABC transporter superfamily.
     
 
0.800
modB-2
ABC-type molybdate uptake system permease component ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     
  0.800
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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