STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_0735Predicted inner membrane protein. (316 aa)    
Predicted Functional Partners:
SO_0734
Transcriptional repressor PadR family.
 
     0.953
SO_1699
Transmembrane transcriptional regulator.
  
    0.776
SO_1425
Outer membrane morn variant repeat-containing protein.
  
     0.645
SO_4069
SAM-dependent methyltransferase type 11.
  
    0.640
SO_4705
Transcriptional repressor Xre family.
  
  
 0.608
gpN
Mu phage DNA circulation protein GpN.
  
    0.585
SO_2902
RDD domain protein.
  
    0.516
SO_1002
Outer membrane morn variant repeat-containing protein.
  
     0.504
SO_3822
Transport protein DMT superfamily.
  
     0.504
SO_3411
Predicted non-catalytic member of peptidase subfamily S41B; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.495
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.