STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0736Predicted periplasmic protein. (264 aa)    
Predicted Functional Partners:
SO_4714
ABC-type amino acid uptake system substrate-binding component PAAT family.
  
    0.738
SO_1143
Periplasmic substrate binding protein family 3.
  
    0.726
SO_1260
Extracellular solute-binding protein family 3.
  
    0.702
SO_3860
Periplasmic substrate binding protein family 3.
  
    0.692
SO_3481
Periplasmic substrate binding protein family 3.
  
    0.686
SO_0056
ABC-type transport system substrate binding component.
  
    0.656
SO_1503
Periplasmic substrate binding protein family 3.
  
    0.635
mshO
MshA minor pilin protein MshO.
  
     0.615
mshJ
MSHA biogenesis protein MshJ.
  
     0.536
mshL
MSHA system outer membrane secretin MshL.
  
     0.532
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.