STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0749Phosphoglycerate mutase family protein. (197 aa)    
Predicted Functional Partners:
glsF
Ferredoxin-dependent glutamate synthase GlsF; Belongs to the glutamate synthase family.
  
  
 0.761
SO_0578
Periplasmic metalloprotease.
 
     0.746
SO_0017
Bifunctional TolB-family protein/amidohydrolase.
 
    0.728
SO_0321
Putative periplasmic protein of unknown function.
  
     0.711
SO_3828
Protein of unknown function DUF819.
  
     0.674
SO_3148
Periplasmic amidohydrolase family protein.
  
     0.634
SO_3149
Periplasmic amidohydrolase family protein.
  
     0.632
SO_0614
Peptidase S9 family.
  
     0.553
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.541
SO_0748
Uncharacterized protein.
  
    0.501
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.