STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atmAABC-type Ni2+/Co2+ export system bifunctional ATPase and permease components AtmA. (596 aa)    
Predicted Functional Partners:
apbC
Scaffold protein for [4Fe-4S] cluster assembly ApbC; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
    
 0.611
SO_3665
ABC-type multidrug eflux system bifunctional ATPase and permease component.
  
 
0.592
msbA
ABC-type lipid A export system bifunctional ATPase and permease components MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
0.566
SO_3128
ABC-type metal export system bifunctional ATPase and permease component.
  
0.553
SO_0753
Uncharacterized protein.
       0.515
grxD
Monothiol glutaredoxin GrxD; Belongs to the glutaredoxin family. Monothiol subfamily.
  
  
 0.453
SO_3821
Diguanylate phosphodiesterase.
   
    0.418
SO_4193
Esterase/lipase/thioesterase family protein.
   
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.