STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0760Ammonium transporter channel family protein. (416 aa)    
Predicted Functional Partners:
glnK
Regulatory protein for nitrogen assimilation GlnK; Belongs to the P(II) protein family.
 
 0.999
glnB
Regulatory protein for nitrogen assimilation by glutamine synthetase GlnB.
 
 0.996
glnK-2
Regulatory protein for nitrogen assimilation GlnK; Belongs to the P(II) protein family.
 
 0.996
SO_0628
Bifunctional diguanylate cyclase/phosphodiesterase.
      0.901
pdeB
Signalling protein with PAS GGDEF and EAL domains; Affects motility and biofilm formation, and is linked to the regulation of sulfate uptake and assimilation.
      0.897
glnL
Nitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL.
 
 
 0.877
rfaE
Bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase RfaE; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
      
 0.871
gltB
NADPH-dependent glutamate synthase large subunit GltB.
 
  
 0.864
SO_0545
Two component signal transduction system response regulator with diguanylate cyclase/phosphodiesterase acitivity.
 
      0.819
SO_2216
Bifunctional diguanylate cyclase with GAF and PAS sensory domains/signalling protein with EAL domain.
 
      0.781
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.