STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0762Isochorismate hydrolase family protein. (180 aa)    
Predicted Functional Partners:
menF
Menaquinone-specific isochorismate synthase MenF; Catalyzes the conversion of chorismate to isochorismate.
  
  
 0.902
hemF
Aerobic coproporphyrinogen III oxidase HemF; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
 
      0.691
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
  
    0.669
SO_4543
Putative alpha-dextrin endo-1 6-alpha-glucosidase.
  
    0.669
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
   
    0.578
mioC
Flavodoxin protein MioC.
   
    0.457
fldA
Flavodoxin FldA; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
   
    0.457
SO_1944
2OG-Fe(II) oxygenase family protein.
   
    0.451
piuC
Fur regulated PKHD-type hydroxylase PiuC.
   
    0.450
SO_3914
TonB-dependent siderophore receptor.
   
    0.414
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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