STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_0798TonB-dependent receptor. (720 aa)    
Predicted Functional Partners:
SO_0797
Periplasmic thioredoxin-family protein.
  
  
 0.983
SO_1156
TonB-dependent siderophore receptor.
   
  
 0.814
SO_1482
TonB-dependent receptor.
 
  
 0.767
SO_4422
TonB-dependent ferric achromobactin receptor.
   
  
 0.761
SO_3914
TonB-dependent siderophore receptor.
 
  
 0.754
SO_2970
Lambda phage uncharacterized protein.
      
 0.739
SO_4743
TonB-dependent siderophore receptor.
 
  
 0.706
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.680
SO_4516
TonB-dependent siderophore receptor.
  
  
 0.680
tonB
TonB1 energy transduction system for heme uptake energy transducer component TonB.
  
 
 0.649
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.